Prenatal CMA concurrent with Prenatal Exome-to-Genome Reflex

NY Approved

Test Overview

Chromosomal microarray (CMA) with concurrent exome interpretation. Exome interpretation automatically reflexes to genome interpretation if the exome result does not fully explain the fetus's phenotype. CMA and exome interpretation are provided within 2 weeks; if reflex to genome interpretation is indicated, those results follow within an additional 1-2 days.

Clinical Utility

  • For an on-going pregnancy or a deceased fetus
  • Establishing a molecular diagnosis in a fetus with abnormal ultrasound findings
  • Recurrence risk assessment

Test Details

Conditions

  • Fetus with ultrasound anomalies

Lab Method

  • Next-Gen Sequencing
  • Whole Genome Chromosomal Microarray

Ordering Information

Important Information

Important Information

Prenatal Whole Genome Chromosomal Microarray (Prenatal CMA) with concurrent Prenatal Exome-to-Genome Reflex, trio. Separate result reports will be issued for the prenatal CMA analysis, the Exome Interpretation of the Prenatal Exome-to-Genome Reflex, and the Genome Interpretation (if reflex is activated) of the Prenatal Exome-to-Genome Reflex.

The Prenatal Exome-to-Genome Reflex test uses genome sequencing data to provide a report of the exome interpretation, including variants that are present within the coding regions of the genome that are most likely to explain the fetal findings. If the exome interpretation does not sufficiently account for the fetal phenotype, then reflex to a genome interpretation is automatically activated, enabling a second report that includes additional variants present in the non‑coding genome regions and select repeat expansions.

Due to the shorter turnaround time (TAT) for this test, it is strongly recommended that the fetal specimen and biological parental specimens are submitted at the same time, along with any required clinical information (i.e., ultrasound reports, consult notes, etc.) in order to initiate testing as soon as possible. If family member samples are not submitted with the fetal sample, the indicated family member samples MUST BE RECEIVED WITHIN 7 CALENDAR DAYS. Fetal testing will remain on hold during this time frame, pending receipt of the family member specimens.

The receipt of parental specimens will not impact the initiation of chromosomal microarray. Parental specimens are still recommended for CMA as they may be tested, if received, for select variants that are identified in the proband to aid in interpretation.

If samples from the indicated family member are not received within the specified timeframe, testing will start with the samples received. Modifications to the test code may impact billing and any prior benefit investigations.

Family member samples submitted for testing should be labeled with the name and date of birth of the person whose sample is contained in the tube, as well as the date of collection. Please list the fetus as the patient (proband). Failure to appropriately label specimens may result in test delays and/or sample rejection.

To ensure that family members are linked properly and in a timely manner, be sure to provide the following information on the test order/requisition form and Sample Info Card submitted with the sample:

  • Family member Name
  • Family member Date of Birth
  • Patient's Name
  • Patient's Date of Birth
  • Family member's relationship to patient

If all of the required information and/or samples are not available at the time the fetal specimen is submitted, please inform us by emailing [email protected]

Trio — Test Code: _GD1016a_GD1017_460 · CPT Codes*: Prenatal CMA: 81229 x1 / Prenatal Exome-to-Genome Reflex (Exome Interpretation): 81415 x1, 81416 x2 / Prenatal Exome-to-Genome Reflex (Genome Interpretation): 81479
Duo — Test Code: _GD1016e_GD1017_460 · CPT Codes*: Prenatal CMA: 81229 x1 / Prenatal Exome-to-Genome Reflex (Exome Interpretation): 81415 x1, 81416 x1 / Prenatal Exome-to-Genome Reflex (Genome Interpretation): 81479
Proband — Test Code: _GD1016b_GD1017_460 · CPT Codes*: Prenatal CMA: 81229 x1 / Prenatal Exome-to-Genome Reflex (Exome Interpretation): 81415 x1 / Prenatal Exome-to-Genome Reflex (Genome Interpretation): 81479
ABN Required: No
Turnaround Time**: CMA and Exome Interpretation: as soon as 2 weeks; reflex to Genome Interpretation (when indicated): 1-2 days
Preferred Specimen: 30 mL Amniotic Fluid | 2 T25 flasks of cultured amniocytes | 2 T25 flasks of cultured chorionic villi | 30 mg CVS | 5 µg DNA Concentration | POC or other fetal tissue
Minimum Specimen:

Samples below the minimum amounts may be accepted, please contact [email protected] in advance to review.

*The CPT codes provided are based on AMA guidelines and are for informational purposes only. CPT coding is the sole responsibility of the billing party. Please direct any questions regarding coding to the payer being billed.

**Turnaround times are estimates and begin once the sample(s) begin processing at the GeneDx lab and could be extended in situations outside GeneDx’s control. Note that if the submitted specimen requires cell culturing, this will delay the start of testing.

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